EDUCATION


Ph.D., Physics Virginia Tech, Blacksburg, Virginia, USA. 2008
Inhomogeneous Totally Asymmetric Simple Exclusion Processes: Simulations, Theory & Application to Protein Synthesis

Advisors: Beate Schmittmann, Royce K.P. Zia.


M.S., Physics Virginia Tech, Blacksburg, Virginia, USA. 2005


B.S., Physics, Shanghai Jiao Tong University, Shanghai, P.R.China. 2003

B.A., English, Shanghai Jiao Tong University, Shanghai, P.R.China. 2003



PUBLICATIONS


  1. 13. J.J. Dong, B. Skinner, N. Breecher, B. Schmittmann and R. K. P. Zia, Spatial structures in a simple model of population dynamics for parasite-host interactions, EPL 111, 48001 (2015)

  2. 12. M. Sahoo, J.J. Dong, and S. Klumpp, Dynamic blockage in an exclusion process, J. Phys. A: Math & Theo. 48, 015007 (2014)

  3. 11. A. Körnig, J.J. Dong, M. Bennet, M. Widdrat, J. Andert, F. D. Müller, D. Schüler, S. Klumpp, and D. Faivre, Probing the Mechanical Properties of Magnetosome Chains in Living Magnetotactic Bacteria, Nano Letters 14(8), 4653 (2014)

  4. 10. L.J. Cook, J.J. Dong, and A. LaFleur, Interplay between finite resources and a local defect in an asymmetric simple exclusion process, Phys. Rev. E 88, 042127 (2013)

  5. 9. J.J. Dong, S. Klumpp and R.K.P. Zia, Mass transport perspective on an accelerated exclusion process:Analysis of augmented current and unit-velocity phases, Phys. Rev. E 87, 022146 (2013)

  6. 8. J.J. Dong, S. Klumpp and R.K.P. Zia, Entrainment and unit velocity: Surprises in an accelerated exclusion process, Phys. Rev. Lett. 109, 130602 (2012)

  7. 7. S. Klumpp, J.J. Dong, T. Hwa, On ribosome load, codon bias and protein abundance, PLOS ONE 7, 11, e48542 (2012)

  8. 6. R.K.P. Zia, J.J. Dong, B. Schmittmann, Modeling Translation in Protein Synthesis with TASEP: a Tutorial and Recent Developments, J. Stat. Phys. 144, 405 (2011)

  9. 5. L.J. Cook, J.J. Dong, Power spectra of TASEPs with a localized slow site, J. Stat. Mech.: Theo & Exp. 2010, P10002 (2010)

  10. 4. J.J. Dong, S.P. Mury, K.E. Drahos, M. Moscovitch, R.K.P. Zia, C.V. Finkielstein, Shorter Exposures to Harder X-Rays Trigger Early Apoptotic Events in Xenopus laevis Embryos, PLOS ONE 10.1371/journal.pone.0008970 (2010)

  11. 3. J.J. Dong, R.K.P Zia, B. Schmittmann, Understanding the edge effect in TASEP with mean-field theoretic approaches, J. Phys. A: Math & Theo. 42, 1, 015002 (2009)

  12. 2. J.J. Dong, B. Schmittmann, R.K.P Zia, Inhomogeneous exclusion processes and protein synthesis, Phys.Rev. E 76, 051113:1 (2007)

  13. 1. J.J. Dong, B. Schmittmann, R.K.P Zia, Towards a model for protein production rates, J. Stat. Phys. 128, 21 (2006)


A complete CV can be found here.