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BIOL 340 Biochemical Methods1/22/98-2/24/98
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In this section of BIOL340 - Biochemical Methods you will investigate two separate experimental procedures. In the first you will study a a specific protein-protein interaction using a bacterially expressed protein. The protein we will examine is Grb2, a mammalian protein involved in several signaling pathways. The open reading frame for Grb2 has been cloned into a plasmid as an in-frame fusion with the enzyme glutathione-S-transferase. We will express the GST-Grb2 protein in bacteria, purify it using affinity chromatography and study its interaction with dynamin obtained from rat brain using a Western blot assay. At the same time you will design your own experiment to test the effect of a particular condition on the ability of Grb2 and dynamin to associate with each other. The second experimental procedure will involve the use of reverst transcriptase - polymerase chain reaction to determine the level of a particular mRNA in various cell types.
| Date | Activity |
|---|---|
| Thursday 1/14 | Introduction Trip to Library |
| Tuesday 1/19 | Make Bacterial Growth Media and Solutions Autoclave |
| Thursday 1/21 | Grow and Harvest GST Fusion Protein Freeze in Aliquots |
| Tuesday 1/26 | Purify GST Fusion Protein on Glutathione Beads Boil Samples |
| Thursday 1/28 | SDS-PAGE of GST samples Stain with Coomasie |
| Tuesday 2/2 | Make Cellular Lysate from Brain Tissue Quantitate Protein |
| Thursday 2/4 | Pull-Down Experiment Boil Samples |
| Tuesday 2/9 | SDS-PAGE and Western Blotting |
| Thursday 2/11 | Incubate Western Blot with Antibodies Develop |
| Tuesday 2/16 | Prepare RNA from cells |
| Thursday 2/18 | Run RNA samples on gel set-up cDNA synthesis Develop |
| Thursday 2/23 | Set-up and run PCR reactions |
| Thursday 2/25 | Run PCR samples on agarose gel |
| Thursday 3/2 | Quiz/Questions/Catch-up |
| Dates | Written Assignment Due | % of grade |
|---|---|---|
| Tuesday 2/2 | Lab Report #1 (up to expression of GST proteins) |
30% |
| Tuesday 2/18 | Lab Report #2 (entire GST experiment) |
30% |
| Tuesday 3/2 | Quiz on material covered in pre-lab lectures | 10% |
| Tuesday 3/5 | Lab Report #3 (No late papers will be accepted!) |
30% |