Phylogenetic Systematics
*A 20-30 min. preparatorypresentation will occur one class period before the discussion.
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Paper |
PDF |
Presenter |
Disc.
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Shapiro,
B., D. Sibthorpe, A. Rambaut, J. Austin, et al. 2002. Flight of the
Dodo. Science 295:1683. |
Dr. J |
early |
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Lamarck's 1809 tree (see Steve Gould's nice essay
"A Tree Grows in |
Dr. J |
early |
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Darwin, C. Origin of Species. 6th Ed.
Ch. 14 |
Dr. J |
Sept. 11
& 13 |
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Dayrat, B. 2003. The roots of phylogeny: how did Haeckel
build his trees? Systematic Biology 52:515-527. |
Dr. J |
Sept. 18 |
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No Class
- Dr. Jordan in France - I'll bring back legal requests... Let me know! |
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Sept. 25 |
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Brady, S.
n. G., S. Sipes, A. Pearson, and B. N. Danforth. 2006. Recent and
simultaneous origins of eusociality in halictid bees. Proceedings of the
Royal Society B: Biological Sciences 273:1643-1649. |
Dr. Capaldi
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Sept. 27 |
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Lecture
and Dana's presentation. |
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Dr. J |
Oct. 2 |
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Grenfell, B. T., O. G. Pybus, J. R. Gog, J. L. N.
Wood, et al. 2004. Unifying the Epidemiological and Evolutionary Dynamics of
Pathogens. Science 303:327-332. |
Dana |
Oct. 4 |
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Jenner, R. A., and M. A. Wills. 2007. The choice of model
organisms in evo-devo. Nature
Reviews Genetics 8:311-314. |
Eric |
Oct. 9 |
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Losos,
J. B., T. R. Jackman, A. Larson, K. de Queiroz, et al. 1998. Contingency
and determinism in replicated adaptive radiations of island lizards. Science
279:2115-2118. |
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Oct. 11 |
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No Class
- Fall Recess |
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Oct. 16 |
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Driscoll, C. A., M. Menotti-Raymond, A. L. Roca, K.
Hupe, et al. 2007. The Near Eastern Origin of Cat Domestication. Science
317:519-523. |
Natalie |
Oct. 18 |
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Green, R. E., J. Krause, S. E. Ptak, A. W. Briggs,
et al. 2006. Analysis of one million base pairs of Neanderthal DNA. Nature
444:330-336. |
Lisa |
Oct. 23 |
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Holmes, E. C., E. Ghedin, N. Miller, J. Taylor, et
al. 2005. Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent
Lineages and Reassortment among Recent H3N2 Viruses. PLoS Biology 3:e300. |
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Ceal |
Oct. 25 |
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Sabeti, P. C.,
S. F. Schaffner, B. Fry, J. Lohmueller,
et al. 2006. Positive natural selection in the human lineage. Science
312:1614-1620. |
Dan |
Oct. 30 |
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Daugherty, C. H., A. Cree, J. M. Hay, and M. B. Thompson.
1990. Neglected taxonomy and continuing extinctions of tuatara (Sphenodon).
Nature 347:177-179. and May, R. M. 1990. Taxonomy as destiny. Nature
347:129-130. |
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Isabel |
Nov. 1 |
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Milinkovitch, M. C., A. Caccone, and G. Amato.
2004. Molecular phylogenetic analyses indicate extensive morphological
convergence between the "yeti" and primates. Molecular
Phylogenetics and Evolution 31:1-3. Background information here. |
Alex |
Nov. 6 |
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Reed, D. L., V. S. Smith, S. L. Hammond, A. R.
Rogers, et al. 2004. Genetic Analysis of Lice Supports Direct Contact between
Modern and Archaic Humans. PLoS Biology 2:e340. and 2004. Did We or Didn't We? Louse Genetic Analysis
Says Yes. PLoS Biology 2:e378. |
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Nov. 8 |
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Ou,
C.-Y., C. A. Ciesielski, G. Myers, C. I. Bandea, et al. 1992. Molecular
Epidemiology of HIV Transmission in a Dental Practice. Science 256:1165-1171. |
Kristina |
Nov. 13 |
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Woese, C.R., Kandler, O., Wheelis, M.L. 1990.
Towards a natural system of organisms: Proposal for the domains Archaea,
Bacteria, and Eucarya. Proceedings of the National Academy of Sciences,
87(12):4576-4579. |
Ashley |
Nov. 15 |
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Hewitt, G. M. 2004. Genetic consequences of
climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London B 359:183-195. |
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Nov. 20 |
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No Class
- Thanksgiving |
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Nov. 22 |
Cavalli-Sforza, L. L., and M. W. Feldman. 2003. The application of molecular genetic approaches to the study of human evolution. Nature Genetics 83:266-275. |
Tomo |
Nov. 27 |
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Searls, D. B. 2003. Pharmacophylogenomics: genes, evolution and drug targets. Nature Reviews Drug Discovery 2:613-623. |
Margaret |
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Dec. 4 |
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Rossman, Amy Y., Miller, Douglass R. Systematics
Solves Problems in Agriculture and Forestry. 1996. Annals of the |
Dr. J |
not covered |
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Acinas, S. G., V. Klepac-Ceraj, D. E. Hunt, C.
Pharino, et al. 2004. Fine-scale phylogenetic architecture of a complex
bacterial community. Nature 430:551-554. |
Dr. J |
not covered |
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Zuckerkandl, E and Pauling, LB (1962). "Molecular
disease, evolution, and genetic heterogeneity", in Kasha, M. and Molecules as documents of evolutionary history. J. Theoret Biol.( 1965), 357-366. Zuckerkandl,
E., and L. Pauling. 1965. Evolutionary divergence and convergence in
proteins. In V. Bryson and H. J. Vogel (eds.), Evolving Genes and Proteins,
Academic Press, New York, 97-166. |
Dr. J |
not covered |